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  5. AMTR_s00002p00262770

AMTR_s00002p00262770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.466

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00262770
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT4G36590 No alias MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
LOC_Os04g49150.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10432602g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c17_24040V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Solyc01g106720.1.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e033123_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 9 59
No external refs found!