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  5. LOC_Os02g07770.1

LOC_Os02g07770.1


Description : G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000069 (LandPlants) Phylogenetic Tree(s): OG_05_0000069_tree ,
OG_06_0000042 (SeedPlants) Phylogenetic Tree(s): OG_06_0000042_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g07770.1
Cluster HCCA: Cluster_291

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263730 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00142p00049490 evm_27.TU.AmTr_v1... Nutrient uptake.phosphorus assimilation.phosphate... 0.02 Archaeplastida
AT1G69580 No alias Homeodomain-like superfamily protein 0.07 Archaeplastida
AT1G79430 APL, WDY Homeodomain-like superfamily protein 0.04 Archaeplastida
AT2G02060 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
AT3G04030 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
AT3G12730 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
AT3G13040 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
AT5G18240 ATMYR1, MYR1 myb-related protein 1 0.04 Archaeplastida
GSVIVT01001376001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01007064001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01009589001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
GSVIVT01015900001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01033381001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01036717001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_01374 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Gb_09291 No alias Protein PHR1-LIKE 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_38388 No alias PHR1 transcription factor involved in proline synthesis... 0.03 Archaeplastida
LOC_Os02g14490.1 No alias Putative Myb family transcription factor At1g14600... 0.04 Archaeplastida
LOC_Os03g21240.1 No alias PHR1 transcription factor involved in proline synthesis... 0.04 Archaeplastida
LOC_Os06g35140.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_181986g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_937875g0010 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Mp3g04970.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Mp4g08700.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Pp3c10_13030V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c13_23440V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c18_20920V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c21_2850V3.1 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
Pp3c22_8217V3.1 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
Pp3c2_310V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Pp3c3_23200V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c4_23130V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Pp3c4_6870V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Pp3c8_8720V3.1 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
Smo405399 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo405704 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Smo438638 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc05g007890.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc08g076400.3.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Solyc10g083340.3.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc10g085620.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc12g017370.3.1 No alias G2-like GARP transcription factor 0.06 Archaeplastida
Zm00001e004125_P001 No alias G2-like GARP transcription factor 0.13 Archaeplastida
Zm00001e005797_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e006632_P003 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e007231_P002 No alias Putative Myb family transcription factor At1g14600... 0.03 Archaeplastida
Zm00001e013758_P003 No alias G2-like GARP transcription factor 0.08 Archaeplastida
Zm00001e015514_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e021698_P001 No alias G2-like GARP transcription factor 0.06 Archaeplastida
Zm00001e023282_P002 No alias G2-like GARP transcription factor 0.07 Archaeplastida
Zm00001e035893_P001 No alias G2-like GARP transcription factor 0.06 Archaeplastida
Zm00001e037731_P001 No alias G2-like GARP transcription factor 0.08 Archaeplastida
Zm00001e037761_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 19 67
IPR025756 Myb_CC_LHEQLE 111 157
No external refs found!