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  5. LOC_Os02g09800.1

LOC_Os02g09800.1


Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana (sp|q9ln01|ppr21_arath : 439.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0021009 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g09800.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
AT4G25270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01005577001 No alias RNA processing.organelle machineries.RNA... 0.17 Archaeplastida
GSVIVT01036393001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
LOC_Os03g08680.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.08 Archaeplastida
LOC_Os05g23960.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_153011g0010 No alias RNA editing factor (MEF1) 0.06 Archaeplastida
Pp3c14_16110V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 612 702
IPR002885 Pentatricopeptide_repeat 308 333
IPR002885 Pentatricopeptide_repeat 279 298
IPR002885 Pentatricopeptide_repeat 511 535
IPR002885 Pentatricopeptide_repeat 146 169
IPR002885 Pentatricopeptide_repeat 203 251
IPR002885 Pentatricopeptide_repeat 336 383
IPR002885 Pentatricopeptide_repeat 437 484
No external refs found!