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  5. AMTR_s00002p00264270

AMTR_s00002p00264270 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.487

Description : Chromatin organisation.histones.H1 linker histone


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00264270

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.71 No alias No description available 0.01 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.06 Archaeplastida
GSVIVT01018807001 No alias Chromatin organisation.histones.H1 linker histone 0.03 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.08 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.07 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.07 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.03 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.03 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.03 Archaeplastida
MA_11231g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.04 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.06 Archaeplastida
Pp3c3_13380V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.01 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.09 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.05 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.02 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.05 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.04 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.09 Archaeplastida
Zm00001e030798_P003 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005342 organic acid transmembrane transporter activity IEP Neighborhood
MF GO:0005343 organic acid:sodium symporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008508 bile acid:sodium symporter activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015125 bile acid transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015293 symporter activity IEP Neighborhood
MF GO:0015294 solute:cation symporter activity IEP Neighborhood
MF GO:0015355 secondary active monocarboxylate transmembrane transporter activity IEP Neighborhood
MF GO:0015370 solute:sodium symporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0140161 monocarboxylate:sodium symporter activity IEP Neighborhood
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 48 117
No external refs found!