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  5. LOC_Os02g10794.1

LOC_Os02g10794.1


Description : Nuclear pore complex protein NUP205 OS=Arabidopsis thaliana (sp|f4kbw6|nu205_arath : 405.0)


Gene families : OG0003770 (Archaeplastida) Phylogenetic Tree(s): OG0003770_tree ,
OG_05_0003597 (LandPlants) Phylogenetic Tree(s): OG_05_0003597_tree ,
OG_06_0006418 (SeedPlants) Phylogenetic Tree(s): OG_06_0006418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g10794.1
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00040040 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 Archaeplastida
Cpa|evm.model.tig00000880.31 No alias No description available 0.01 Archaeplastida
Cre13.g578100 No alias No description available 0.04 Archaeplastida
GSVIVT01015528001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
MA_102119g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.05 Archaeplastida
MA_10430391g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.05 Archaeplastida
MA_10433042g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.06 Archaeplastida
MA_23099g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 Archaeplastida
MA_585707g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
Pp3c4_20350V3.1 No alias Protein of unknown function (DUF3414) 0.03 Archaeplastida
Smo439663 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 Archaeplastida
Solyc12g006480.2.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.05 Archaeplastida
Zm00001e014006_P001 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.11 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036297 interstrand cross-link repair IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043240 Fanconi anaemia nuclear complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 30 377
No external refs found!