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  5. LOC_Os02g12850.1

LOC_Os02g12850.1


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 174.0)


Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0001171 (LandPlants) Phylogenetic Tree(s): OG_05_0001171_tree ,
OG_06_0001131 (SeedPlants) Phylogenetic Tree(s): OG_06_0001131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g12850.1
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
AMTR_s00061p00188860 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Cpa|evm.model.tig00001130.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012784001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01016872001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_41766 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 Archaeplastida
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Mp1g27850.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c26_10420V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c26_4470V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Pp3c2_9200V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c4_17440V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Smo101375 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc02g093340.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc03g005680.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Solyc03g121710.2.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Solyc07g045240.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc09g090520.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e004612_P001 No alias no hits & (original description: none) 0.11 Archaeplastida
Zm00001e012709_P005 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e014461_P003 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.12 Archaeplastida
Zm00001e024336_P003 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e024934_P002 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.09 Archaeplastida
Zm00001e030652_P001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.12 Archaeplastida
Zm00001e037155_P004 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 68 135
IPR000504 RRM_dom 157 226
No external refs found!