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  5. LOC_Os02g13260.1

LOC_Os02g13260.1


Description : Probable F-box protein At4g22030 OS=Arabidopsis thaliana (sp|o65451|fb333_arath : 143.0)


Gene families : OG0001122 (Archaeplastida) Phylogenetic Tree(s): OG0001122_tree ,
OG_05_0000683 (LandPlants) Phylogenetic Tree(s): OG_05_0000683_tree ,
OG_06_0000651 (SeedPlants) Phylogenetic Tree(s): OG_06_0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g13260.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00037390 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00044p00128270 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00044p00128640 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00045p00207230 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00055p00185500 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00067p00091510 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00085p00174790 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.04 Archaeplastida
AT4G22030 No alias F-box family protein with a domain of unknown function (DUF295) 0.03 Archaeplastida
Gb_15744 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_15745 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_15746 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os02g28590.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp5g00910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp5g17910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc02g080840.1.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc02g080850.1.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e014444_P001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 84 412
No external refs found!