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  5. LOC_Os02g13400.2

LOC_Os02g13400.2


Description : poly(A) RNA polymerase


Gene families : OG0001358 (Archaeplastida) Phylogenetic Tree(s): OG0001358_tree ,
OG_05_0001486 (LandPlants) Phylogenetic Tree(s): OG_05_0001486_tree ,
OG_06_0001201 (SeedPlants) Phylogenetic Tree(s): OG_06_0001201_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g13400.2
Cluster HCCA: Cluster_314

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008352001 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.03 Archaeplastida
Solyc08g066200.3.1 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Zm00001e012328_P001 No alias poly(A) RNA polymerase 0.03 Archaeplastida
Zm00001e024922_P001 No alias poly(A) RNA polymerase 0.04 Archaeplastida
Zm00001e037202_P005 No alias poly(A) RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
BP GO:0017006 protein-tetrapyrrole linkage IEP Neighborhood
BP GO:0017007 protein-bilin linkage IEP Neighborhood
BP GO:0017009 protein-phycocyanobilin linkage IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
CC GO:0071203 WASH complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 97 169
IPR007010 PolA_pol_RNA-bd_dom 371 429
IPR007010 PolA_pol_RNA-bd_dom 431 503
IPR007012 PolA_pol_cen_dom 24 369
No external refs found!