1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00002p00267080

AMTR_s00002p00267080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.517

Description : Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0009426 (Archaeplastida) Phylogenetic Tree(s): OG0009426_tree ,
OG_05_0008064 (LandPlants) Phylogenetic Tree(s): OG_05_0008064_tree ,
OG_06_0003928 (SeedPlants) Phylogenetic Tree(s): OG_06_0003928_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00267080
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00186050 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
CC GO:0009317 acetyl-CoA carboxylase complex IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 110 137
IPR002885 Pentatricopeptide_repeat 180 205
IPR002885 Pentatricopeptide_repeat 206 245
No external refs found!