LOC_Os02g14780.2

Description : component SF3A1 of splicing factor 3A complex

Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree ,
OG_05_0003043 (LandPlants) Phylogenetic Tree(s): OG_05_0003043_tree ,
OG_06_0004939 (SeedPlants) Phylogenetic Tree(s): OG_06_0004939_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g14780.2
Cluster	HCCA: Cluster_297

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00096200	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.05	Archaeplastida
AT1G14650	No alias	SWAP (Suppressor-of-White-APricot)/surp...	0.03	Archaeplastida
AT4G16200	No alias	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	0.03	Archaeplastida
Cre06.g307450	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	Archaeplastida
GSVIVT01012058001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	Archaeplastida
Gb_03741	No alias	component SF3A1 of splicing factor 3A complex	0.06	Archaeplastida
Gb_32888	No alias	component SF3A1 of splicing factor 3A complex	0.03	Archaeplastida
MA_10432431g0010	No alias	component SF3A1 of splicing factor 3A complex	0.04	Archaeplastida
Mp6g07670.1	No alias	component SF3A1 of splicing factor 3A complex	0.04	Archaeplastida
Smo146605	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	Archaeplastida
Solyc02g081960.3.1	No alias	component SF3A1 of splicing factor 3A complex	0.03	Archaeplastida
Solyc04g005690.4.1	No alias	component SF3A1 of splicing factor 3A complex	0.04	Archaeplastida
Zm00001e017307_P001	No alias	component SF3A1 of splicing factor 3A complex	0.08	Archaeplastida
Zm00001e025538_P001	No alias	no hits & (original description: none)	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	731	787
IPR000061	Surp	186	237
IPR000061	Surp	58	106
IPR022030	SF3A1	258	475

External Links

No external refs found!