Description : SCL28/30/33 RNA splicing factor
Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree ,
OG_05_0001146 (LandPlants) Phylogenetic Tree(s): OG_05_0001146_tree ,
OG_06_0001172 (SeedPlants) Phylogenetic Tree(s): OG_06_0001172_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os02g15310.1 | |
Cluster | HCCA: Cluster_348 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00012p00222390 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome-associated... | 0.03 | Archaeplastida | |
AT1G55310 | SR33, At-SCL33,... | SC35-like splicing factor 33 | 0.03 | Archaeplastida | |
AT3G13570 | At-SCL30A, SCL30A | SC35-like splicing factor 30A | 0.03 | Archaeplastida | |
AT3G55460 | SCL30, At-SCL30 | SC35-like splicing factor 30 | 0.06 | Archaeplastida | |
GSVIVT01001344001 | No alias | No description available | 0.05 | Archaeplastida | |
GSVIVT01025432001 | No alias | Serine/arginine-rich SC35-like splicing factor SCL30A... | 0.04 | Archaeplastida | |
MA_89588g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
Mp4g01880.1 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida | |
Pp3c5_15610V3.1 | No alias | SC35-like splicing factor 30A | 0.03 | Archaeplastida | |
Pp3s152_10V3.1 | No alias | SC35-like splicing factor 30A | 0.04 | Archaeplastida | |
Solyc01g005820.4.1 | No alias | SCL28/30/33 RNA splicing factor | 0.05 | Archaeplastida | |
Zm00001e002967_P002 | No alias | SCL28/30/33 RNA splicing factor | 0.03 | Archaeplastida | |
Zm00001e038130_P001 | No alias | SCL28/30/33 RNA splicing factor | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000502 | proteasome complex | IEP | Neighborhood |
BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003684 | damaged DNA binding | IEP | Neighborhood |
MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
MF | GO:0003713 | transcription coactivator activity | IEP | Neighborhood |
MF | GO:0004379 | glycylpeptide N-tetradecanoyltransferase activity | IEP | Neighborhood |
MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
BP | GO:0006289 | nucleotide-excision repair | IEP | Neighborhood |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
BP | GO:0006621 | protein retention in ER lumen | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
BP | GO:0009894 | regulation of catabolic process | IEP | Neighborhood |
BP | GO:0010498 | proteasomal protein catabolic process | IEP | Neighborhood |
MF | GO:0016410 | N-acyltransferase activity | IEP | Neighborhood |
BP | GO:0016556 | mRNA modification | IEP | Neighborhood |
CC | GO:0016592 | mediator complex | IEP | Neighborhood |
MF | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
MF | GO:0019107 | myristoyltransferase activity | IEP | Neighborhood |
BP | GO:0030163 | protein catabolic process | IEP | Neighborhood |
BP | GO:0032259 | methylation | IEP | Neighborhood |
BP | GO:0032507 | maintenance of protein location in cell | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
MF | GO:0033218 | amide binding | IEP | Neighborhood |
BP | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0042176 | regulation of protein catabolic process | IEP | Neighborhood |
MF | GO:0042277 | peptide binding | IEP | Neighborhood |
BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0045185 | maintenance of protein location | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046923 | ER retention sequence binding | IEP | Neighborhood |
BP | GO:0051235 | maintenance of location | IEP | Neighborhood |
BP | GO:0051651 | maintenance of location in cell | IEP | Neighborhood |
BP | GO:0072595 | maintenance of protein localization in organelle | IEP | Neighborhood |
BP | GO:0080009 | mRNA methylation | IEP | Neighborhood |
MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Neighborhood |
CC | GO:1905368 | peptidase complex | IEP | Neighborhood |
CC | GO:1905369 | endopeptidase complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 39 | 108 |
No external refs found! |