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  5. AMTR_s00002p00268120

AMTR_s00002p00268120 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.533

Description : Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006821 (Archaeplastida) Phylogenetic Tree(s): OG0006821_tree ,
OG_05_0009059 (LandPlants) Phylogenetic Tree(s): OG_05_0009059_tree ,
OG_06_0009047 (SeedPlants) Phylogenetic Tree(s): OG_06_0009047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00268120
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00121230 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.03 Archaeplastida
AMTR_s00010p00262030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74630... 0.04 Archaeplastida
AMTR_s00016p00241430 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00029p00051450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56550... 0.04 Archaeplastida
AMTR_s00049p00220350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g02980,... 0.04 Archaeplastida
AMTR_s00059p00175950 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
AMTR_s00092p00099090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.11 Archaeplastida
AMTR_s01859p00006880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.05 Archaeplastida
Solyc02g072010.3.1 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 171 218
IPR002885 Pentatricopeptide_repeat 304 340
IPR002885 Pentatricopeptide_repeat 145 169
IPR002885 Pentatricopeptide_repeat 275 302
IPR002885 Pentatricopeptide_repeat 247 272
No external refs found!