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  5. AMTR_s00002p00268520

AMTR_s00002p00268520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.537

Description : Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0003722 (LandPlants) Phylogenetic Tree(s): OG_05_0003722_tree ,
OG_06_0003603 (SeedPlants) Phylogenetic Tree(s): OG_06_0003603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00268520
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.07 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_102823g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_185599g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 380 427
IPR002885 Pentatricopeptide_repeat 765 805
IPR002885 Pentatricopeptide_repeat 590 636
IPR002885 Pentatricopeptide_repeat 196 240
IPR002885 Pentatricopeptide_repeat 312 357
IPR002885 Pentatricopeptide_repeat 523 564
IPR002885 Pentatricopeptide_repeat 493 511
IPR002885 Pentatricopeptide_repeat 697 725
IPR002885 Pentatricopeptide_repeat 162 186
IPR002885 Pentatricopeptide_repeat 661 684
No external refs found!