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  5. LOC_Os02g21580.1

LOC_Os02g21580.1


Description : Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana (sp|q3edf8|ppr28_arath : 183.0)


Gene families : OG0011970 (Archaeplastida) Phylogenetic Tree(s): OG0011970_tree ,
OG_05_0012563 (LandPlants) Phylogenetic Tree(s): OG_05_0012563_tree ,
OG_06_0017005 (SeedPlants) Phylogenetic Tree(s): OG_06_0017005_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g21580.1
Cluster HCCA: Cluster_141


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 322 369
IPR002885 Pentatricopeptide_repeat 183 230
IPR002885 Pentatricopeptide_repeat 251 300
IPR002885 Pentatricopeptide_repeat 92 140
IPR002885 Pentatricopeptide_repeat 389 437
IPR002885 Pentatricopeptide_repeat 55 80
No external refs found!