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  5. LOC_Os02g28590.1

LOC_Os02g28590.1


Description : no hits & (original description: none)


Gene families : OG0001122 (Archaeplastida) Phylogenetic Tree(s): OG0001122_tree ,
OG_05_0000683 (LandPlants) Phylogenetic Tree(s): OG_05_0000683_tree ,
OG_06_0000651 (SeedPlants) Phylogenetic Tree(s): OG_06_0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g28590.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00207230 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00055p00185500 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00085p00174790 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.04 Archaeplastida
AT4G22030 No alias F-box family protein with a domain of unknown function (DUF295) 0.03 Archaeplastida
LOC_Os02g13260.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Mp5g00910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp5g00950.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc02g080850.1.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 3 65
IPR027949 Chloroplast_duf 75 107
No external refs found!