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  5. LOC_Os02g28810.1

LOC_Os02g28810.1


Description : 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica (sp|p49199|rs8_orysj : 337.0)


Gene families : OG0001661 (Archaeplastida) Phylogenetic Tree(s): OG0001661_tree ,
OG_05_0001408 (LandPlants) Phylogenetic Tree(s): OG_05_0001408_tree ,
OG_06_0002231 (SeedPlants) Phylogenetic Tree(s): OG_06_0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g28810.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
AT5G20290 No alias Ribosomal protein S8e family protein 0.39 Archaeplastida
AT5G59240 No alias Ribosomal protein S8e family protein 0.03 Archaeplastida
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.08 Archaeplastida
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 Archaeplastida
Gb_28325 No alias component RPS8 of SSU proteome 0.15 Archaeplastida
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.14 Archaeplastida
MA_10436736g0010 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_14571g0010 No alias component RPS8 of SSU proteome 0.11 Archaeplastida
MA_4907g0010 No alias 40S ribosomal protein S8 OS=Prunus armeniaca... 0.06 Archaeplastida
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.04 Archaeplastida
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.34 Archaeplastida
Pp3c12_18260V3.1 No alias Ribosomal protein S8e family protein 0.07 Archaeplastida
Pp3c13_20020V3.1 No alias Ribosomal protein S8e family protein 0.36 Archaeplastida
Pp3c19_6490V3.1 No alias Ribosomal protein S8e family protein 0.23 Archaeplastida
Pp3c22_1860V3.1 No alias Ribosomal protein S8e family protein 0.3 Archaeplastida
Pp3c4_11370V3.1 No alias Ribosomal protein S8e family protein 0.13 Archaeplastida
Solyc06g007570.3.1 No alias component RPS8 of SSU proteome 0.21 Archaeplastida
Solyc06g083180.4.1 No alias component RPS8 of SSU proteome 0.31 Archaeplastida
Solyc07g065170.3.1 No alias component RPS8 of SSU proteome 0.12 Archaeplastida
Solyc09g057650.3.1 No alias component RPS8 of SSU proteome 0.15 Archaeplastida
Solyc10g006070.3.1 No alias component RPS8 of SSU proteome 0.11 Archaeplastida
Zm00001e004092_P002 No alias component RPS8 of SSU proteome 0.16 Archaeplastida
Zm00001e024994_P001 No alias component RPS8 of SSU proteome 0.06 Archaeplastida
Zm00001e024995_P001 No alias component RPS8 of SSU proteome 0.33 Archaeplastida
Zm00001e024996_P001 No alias component RPS8 of SSU proteome 0.17 Archaeplastida
Zm00001e024999_P001 No alias component RPS8 of SSU proteome 0.1 Archaeplastida
Zm00001e025000_P003 No alias no hits & (original description: none) 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0006449 regulation of translational termination IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043022 ribosome binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043243 positive regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045901 positive regulation of translational elongation IEP Neighborhood
BP GO:0045905 positive regulation of translational termination IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 216
No external refs found!