LOC_Os02g30730.2

Description : SART-1 family protein DOT2 OS=Arabidopsis thaliana (sp|q9lfe0|dot2_arath : 411.0)

Gene families : OG0003313 (Archaeplastida) Phylogenetic Tree(s): OG0003313_tree ,
OG_05_0006425 (LandPlants) Phylogenetic Tree(s): OG_05_0006425_tree ,
OG_06_0008464 (SeedPlants) Phylogenetic Tree(s): OG_06_0008464_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g30730.2
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00135160	evm_27.TU.AmTr_v1...	SART-1 family protein DOT2 OS=Arabidopsis thaliana	0.02	Archaeplastida
AT5G16780	MDF, DOT2	SART-1 family	0.07	Archaeplastida
Cpa\|evm.model.tig00000471.16	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_00217	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana...	0.01	Archaeplastida
Gb_12198	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Mp8g09130.1	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Pp3c15_10170V3.1	No alias	SART-1 family	0.02	Archaeplastida
Smo404232	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana	0.04	Archaeplastida
Solyc11g008460.1.1	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana...	0.13	Archaeplastida
Solyc11g008470.2.1	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana...	0.1	Archaeplastida
Zm00001e018582_P001	No alias	SART-1 family protein DOT2 OS=Arabidopsis thaliana...	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0004000	adenosine deaminase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005685	U1 snRNP	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006376	mRNA splice site selection	IEP	Neighborhood
BP	GO:0006382	adenosine to inosine editing	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016553	base conversion or substitution editing	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0019239	deaminase activity	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0030688	preribosome, small subunit precursor	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
CC	GO:0034457	Mpp10 complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044452	nucleolar part	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
CC	GO:0097525	spliceosomal snRNP complex	IEP	Neighborhood
CC	GO:0120114	Sm-like protein family complex	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005011	SNU66/SART1	120	652
IPR005011	SNU66/SART1	665	711

External Links

No external refs found!

LOC_Os02g30730.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation