AMTR_s00002p00271460 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.626

Description : RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA Cap-Binding complex (CBC).CBP20 component

Gene families : OG0006350 (Archaeplastida) Phylogenetic Tree(s): OG0006350_tree ,
OG_05_0007807 (LandPlants) Phylogenetic Tree(s): OG_05_0007807_tree ,
OG_06_0008844 (SeedPlants) Phylogenetic Tree(s): OG_06_0008844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00271460
Cluster	HCCA: Cluster_247

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT5G44200	CBP20, ATCBP20	CAP-binding protein 20	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEP	Neighborhood
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	61	131

External Links

No external refs found!