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  5. AMTR_s00002p00271910

AMTR_s00002p00271910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.647

Description : Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0005041 (SeedPlants) Phylogenetic Tree(s): OG_06_0005041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00271910
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT1G80550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Gb_12501 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
LOC_Os09g37070.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.04 Archaeplastida
Solyc04g081950.4.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e015994_P001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008831 dTDP-4-dehydrorhamnose reductase activity IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0045226 extracellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0046379 extracellular polysaccharide metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 355
IPR002885 Pentatricopeptide_repeat 416 461
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 374 406
IPR002885 Pentatricopeptide_repeat 479 511
IPR002885 Pentatricopeptide_repeat 170 200
No external refs found!