LOC_Os02g36924.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002316 (SeedPlants) Phylogenetic Tree(s): OG_06_0002316_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g36924.1
Cluster	HCCA: Cluster_280

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00270400	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00013p00114420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01009171001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.07	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01036549001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01037022001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
LOC_Os03g03100.1	No alias	transcription factor (MADS/AGL)	0.09	Archaeplastida
LOC_Os06g11330.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
LOC_Os06g22540.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os10g39130.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_101463g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10256834g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_10289256g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10432817g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_126898g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_128164g0010	No alias	No annotation	0.02	Archaeplastida
MA_133455g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_138440g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_141872g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_15122g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_16120g0010	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_19007g0010	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
MA_206542g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_254338g0010	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
MA_32676g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_35712g0010	No alias	transcription factor (MADS/AGL)	0.1	Archaeplastida
MA_45349g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_57493g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_69370g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_7858089g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_95674g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Mp4g12490.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc01g106170.4.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.02	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc03g006830.3.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc04g076280.4.1	No alias	MADS-box protein SVP OS=Arabidopsis thaliana...	0.07	Archaeplastida
Solyc06g064840.4.1	No alias	no description available(sp\|f6i457\|ag11c_vitvi : 172.0)	0.02	Archaeplastida
Solyc07g055920.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.02	Archaeplastida
Solyc08g080100.4.1	No alias	no hits & (original description: none)	0.1	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e038096_P002	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015693	magnesium ion transport	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	83	170
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

LOC_Os02g36924.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation