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  5. LOC_Os02g37862.1

LOC_Os02g37862.1


Description : component RPL6 of LSU proteome component


Gene families : OG0002580 (Archaeplastida) Phylogenetic Tree(s): OG0002580_tree ,
OG_05_0002755 (LandPlants) Phylogenetic Tree(s): OG_05_0002755_tree ,
OG_06_0003200 (SeedPlants) Phylogenetic Tree(s): OG_06_0003200_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g37862.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
AT1G18540 No alias Ribosomal protein L6 family protein 0.36 Archaeplastida
AT1G74050 No alias Ribosomal protein L6 family protein 0.3 Archaeplastida
AT1G74060 No alias Ribosomal protein L6 family protein 0.18 Archaeplastida
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.24 Archaeplastida
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.3 Archaeplastida
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
GSVIVT01033532001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 Archaeplastida
Gb_01604 No alias component RPL6 of LSU proteome component 0.18 Archaeplastida
MA_108607g0010 No alias component RPL6 of LSU proteome component 0.32 Archaeplastida
MA_807054g0010 No alias component RPL6 of LSU proteome component 0.02 Archaeplastida
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.46 Archaeplastida
Pp3c14_4100V3.1 No alias Ribosomal protein L6 family protein 0.12 Archaeplastida
Pp3c14_4160V3.1 No alias Ribosomal protein L6 family protein 0.21 Archaeplastida
Pp3c1_24300V3.1 No alias Ribosomal protein L6 family protein 0.2 Archaeplastida
Pp3c2_13300V3.1 No alias Ribosomal protein L6 family protein 0.16 Archaeplastida
Smo270686 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Solyc04g014720.4.1 No alias component RPL6 of LSU proteome component 0.11 Archaeplastida
Solyc05g054070.4.1 No alias component RPL6 of LSU proteome component 0.19 Archaeplastida
Solyc11g012110.2.1 No alias component RPL6 of LSU proteome component 0.31 Archaeplastida
Zm00001e014979_P001 No alias component RPL6 of LSU proteome component 0.32 Archaeplastida
Zm00001e022840_P001 No alias component RPL6 of LSU proteome component 0.42 Archaeplastida
Zm00001e022841_P001 No alias component RPL6 of LSU proteome component 0.44 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 112 219
No external refs found!