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  5. LOC_Os02g38250.1

LOC_Os02g38250.1


Description : GLE1 scaffold nucleoporin of nuclear pore complex


Gene families : OG0005402 (Archaeplastida) Phylogenetic Tree(s): OG0005402_tree ,
OG_05_0006092 (LandPlants) Phylogenetic Tree(s): OG_05_0006092_tree ,
OG_06_0005452 (SeedPlants) Phylogenetic Tree(s): OG_06_0005452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g38250.1
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Zm00001e011806_P001 No alias GLE1 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0016973 poly(A)+ mRNA export from nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR012476 GLE1 329 560
No external refs found!