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  5. LOC_Os02g39160.1

LOC_Os02g39160.1


Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase


Gene families : OG0003732 (Archaeplastida) Phylogenetic Tree(s): OG0003732_tree ,
OG_05_0004516 (LandPlants) Phylogenetic Tree(s): OG_05_0004516_tree ,
OG_06_0006516 (SeedPlants) Phylogenetic Tree(s): OG_06_0006516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39160.1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00057810 evm_27.TU.AmTr_v1... Secondary metabolism.terpenoids.methylerythritol... 0.03 Archaeplastida
AT5G60600 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.04 Archaeplastida
Cpa|evm.model.tig00020563.161 No alias Secondary metabolism.terpenoids.methylerythritol... 0.01 Archaeplastida
Cre12.g490350 No alias Secondary metabolism.terpenoids.methylerythritol... 0.02 Archaeplastida
MA_88006g0010 No alias 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 Archaeplastida
Mp5g09870.1 No alias 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 Archaeplastida
Solyc11g069380.2.1 No alias 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.05 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006090 pyruvate metabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Neighborhood
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Neighborhood
MF GO:0070402 NADPH binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004588 IspG_bac-typ 90 732
No external refs found!