LOC_Os02g39300.1


Description : pre-mRNA-processing protein (LUC7)


Gene families : OG0004183 (Archaeplastida) Phylogenetic Tree(s): OG0004183_tree ,
OG_05_0004327 (LandPlants) Phylogenetic Tree(s): OG_05_0004327_tree ,
OG_06_0004695 (SeedPlants) Phylogenetic Tree(s): OG_06_0004695_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g39300.1
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021357.16 No alias No description available 0.02 Archaeplastida
MA_79834g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g03530.1 No alias pre-mRNA-processing protein (LUC7) 0.06 Archaeplastida
Pp3c25_5550V3.1 No alias LUC7 related protein 0.02 Archaeplastida
Smo151152 No alias No description available 0.02 Archaeplastida
Solyc05g056280.2.1 No alias pre-mRNA-processing protein (LUC7) 0.02 Archaeplastida
Zm00001e011667_P003 No alias pre-mRNA-processing protein (LUC7) 0.11 Archaeplastida
Zm00001e015057_P004 No alias pre-mRNA-processing protein (LUC7) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
CC GO:0005685 U1 snRNP IEA Interproscan
BP GO:0006376 mRNA splice site selection IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004882 Luc7-rel 181 327
IPR004882 Luc7-rel 2 174
No external refs found!