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  5. AMTR_s00003p00034600

AMTR_s00003p00034600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.17

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL29 component


Gene families : OG0004913 (Archaeplastida) Phylogenetic Tree(s): OG0004913_tree ,
OG_05_0004281 (LandPlants) Phylogenetic Tree(s): OG_05_0004281_tree ,
OG_06_0006050 (SeedPlants) Phylogenetic Tree(s): OG_06_0006050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00034600
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Cre03.g207050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
Mp1g23580.1 No alias component RPL29 of LSU proteome component 0.03 Archaeplastida
Pp3c10_8040V3.1 No alias Ribosomal L29e protein family 0.03 Archaeplastida
Pp3c14_7570V3.1 No alias Ribosomal L29e protein family 0.05 Archaeplastida
Pp3c1_34380V3.1 No alias Ribosomal L29e protein family 0.03 Archaeplastida
Smo228166 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002673 Ribosomal_L29e 3 42
No external refs found!