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  5. LOC_Os02g41560.1

LOC_Os02g41560.1


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana (sp|q9fjy7|pp449_arath : 310.0)


Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0005093 (LandPlants) Phylogenetic Tree(s): OG_05_0005093_tree ,
OG_06_0003390 (SeedPlants) Phylogenetic Tree(s): OG_06_0003390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g41560.1
Cluster HCCA: Cluster_351

Target Alias Description ECC score Gene Family Method Actions
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
GSVIVT01029336001 No alias Pentatricopeptide repeat-containing protein At1g74630... 0.14 Archaeplastida
GSVIVT01033906001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os01g65840.1 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.08 Archaeplastida
MA_29579g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.17 Archaeplastida
Smo111471 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 Archaeplastida
Solyc08g079640.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.14 Archaeplastida
Solyc11g006940.3.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
Solyc11g012570.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.07 Archaeplastida
Zm00001e008183_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e019067_P001 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 302 349
IPR002885 Pentatricopeptide_repeat 203 232
IPR002885 Pentatricopeptide_repeat 171 199
IPR002885 Pentatricopeptide_repeat 140 170
IPR002885 Pentatricopeptide_repeat 376 401
No external refs found!