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  5. AMTR_s00003p00048580

AMTR_s00003p00048580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.29

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor


Gene families : OG0004221 (Archaeplastida) Phylogenetic Tree(s): OG0004221_tree ,
OG_05_0008451 (LandPlants) Phylogenetic Tree(s): OG_05_0008451_tree ,
OG_06_0007828 (SeedPlants) Phylogenetic Tree(s): OG_06_0007828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00048580
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g19560.1 No alias plastidial RNA transcript stability factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013105 TPR_2 454 482
No external refs found!