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  5. LOC_Os02g42870.1

LOC_Os02g42870.1


Description : transcription factor (MYB)


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0002418 (SeedPlants) Phylogenetic Tree(s): OG_06_0002418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g42870.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00252990 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00019p00201260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00030p00146410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00045p00146180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
AMTR_s00048p00210040 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00109p00061950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
AT1G14350 AtMYB124, MYB124, FLP Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT1G16490 MYB58, ATMYB58 myb domain protein 58 0.03 Archaeplastida
AT1G17950 BW52, ATMYB52, MYB52 myb domain protein 52 0.03 Archaeplastida
AT1G25340 MYB116, AtMYB116 myb domain protein 116 0.03 Archaeplastida
AT1G26780 AtMYB117, LOF1, MYB117 myb domain protein 117 0.03 Archaeplastida
AT1G63910 MYB103, AtMYB103 myb domain protein 103 0.03 Archaeplastida
AT1G68320 BW62B, BW62C,... myb domain protein 62 0.02 Archaeplastida
AT1G79180 ATMYB63, MYB63 myb domain protein 63 0.03 Archaeplastida
AT2G47190 MYB2, ATMYB2 myb domain protein 2 0.03 Archaeplastida
AT3G01140 MYB106, NOK, AtMYB106 myb domain protein 106 0.05 Archaeplastida
AT3G08500 AtMYB83, MYB83 myb domain protein 83 0.02 Archaeplastida
AT3G13540 ATMYB5, MYB5 myb domain protein 5 0.03 Archaeplastida
AT3G27785 PGA37, ATMYB118, MYB118 myb domain protein 118 0.02 Archaeplastida
AT3G47600 ATMYB94, ATMYBCP70, MYB94 myb domain protein 94 0.04 Archaeplastida
AT3G48920 MYB45, AtMYB45 myb domain protein 45 0.02 Archaeplastida
AT3G49690 MYB84, RAX3, ATMYB84 myb domain protein 84 0.05 Archaeplastida
AT3G53200 AtMYB27, MYB27 myb domain protein 27 0.02 Archaeplastida
AT3G61250 AtMYB17, MYB17 myb domain protein 17 0.04 Archaeplastida
AT4G09460 MYB6, AtMYB6 myb domain protein 6 0.03 Archaeplastida
AT4G21440 ATMYB102, ATM4, MYB102 MYB-like 102 0.02 Archaeplastida
AT4G22680 AtMYB85, MYB85 myb domain protein 85 0.03 Archaeplastida
AT4G33450 ATMYB69, MYB69 myb domain protein 69 0.03 Archaeplastida
AT5G10280 ATMYB64, ATMYB92, MYB92 myb domain protein 92 0.03 Archaeplastida
AT5G11510 AtMYB3R4, MYB3R-4 myb domain protein 3r-4 0.03 Archaeplastida
AT5G12870 ATMYB46, MYB46 myb domain protein 46 0.03 Archaeplastida
AT5G14340 AtMYB40, MYB40 myb domain protein 40 0.03 Archaeplastida
AT5G52260 MYB19, AtMYB19 myb domain protein 19 0.03 Archaeplastida
AT5G57620 MYB36, AtMYB36 myb domain protein 36 0.03 Archaeplastida
Cpa|evm.model.tig00021108.38 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
Cre07.g345350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 Archaeplastida
GSVIVT01004317001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01008090001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01014770001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01015264001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01019410001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01019967001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01025269001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01026868001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
GSVIVT01028235001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01029904001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01032088001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01032564001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01035332001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01035463001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01035663001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_02422 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_03400 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_05115 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_06298 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_09998 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_13117 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_29933 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_32143 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_34086 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_39852 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_40065 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g16810.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os05g46610.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os08g33800.1 No alias transcription factor (MYB) 0.06 Archaeplastida
LOC_Os09g24800.1 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10435612g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_128244g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_139238g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_14204g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_7091g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_83918g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_9483804g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
Mp1g09420.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Pp3c12_10360V3.1 No alias myb domain protein 105 0.02 Archaeplastida
Pp3c17_19947V3.1 No alias myb domain protein 88 0.02 Archaeplastida
Pp3c17_7730V3.1 No alias myb domain protein 55 0.02 Archaeplastida
Pp3c2_37040V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Smo80553 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo84195 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc01g005660.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc01g087130.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc01g094360.3.1 No alias transcription factor (MYB) 0.07 Archaeplastida
Solyc01g102340.3.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc02g067760.4.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc03g005570.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc03g112390.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc04g005600.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc04g005710.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc05g007690.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc05g007710.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc05g007870.3.1 No alias transcription factor (MYB) 0.08 Archaeplastida
Solyc05g048830.3.1 No alias transcription factor (MYB) 0.07 Archaeplastida
Solyc06g009710.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g006750.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g008010.4.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc08g080580.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc08g081500.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e007904_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e015239_P001 No alias transcription factor (MYB) 0.08 Archaeplastida
Zm00001e016403_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e017428_P003 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e020044_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e023277_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e027531_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e028135_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e031356_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e032298_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e040384_P001 No alias transcription factor (MYB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0007050 cell cycle arrest IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036297 interstrand cross-link repair IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043240 Fanconi anaemia nuclear complex IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 67 112
IPR001005 SANT/Myb 14 61
No external refs found!