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  5. AMTR_s00003p00085870

AMTR_s00003p00085870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.51

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0002214 (SeedPlants) Phylogenetic Tree(s): OG_06_0002214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00085870
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00028p00077900 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G69940 ATPPME1, PPME1 Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G47280 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G07420 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01018823001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.02 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.03 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.03 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g19440.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_112715g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_181657g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_6149868g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12770V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c5_23400V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1440V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.01 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e029074_P001 No alias pectin methylesterase 0.01 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 2 137
No external refs found!