LOC_Os02g46990.1


Description : no hits & (original description: none)


Gene families : OG0002755 (Archaeplastida) Phylogenetic Tree(s): OG0002755_tree ,
OG_05_0002363 (LandPlants) Phylogenetic Tree(s): OG_05_0002363_tree ,
OG_06_0002373 (SeedPlants) Phylogenetic Tree(s): OG_06_0002373_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g46990.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00246950 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.03 Archaeplastida
AMTR_s00103p00060940 evm_27.TU.AmTr_v1... Cell division cycle protein 48 homolog OS=Glycine max 0.02 Archaeplastida
AT5G16930 No alias AAA-type ATPase family protein 0.02 Archaeplastida
GSVIVT01018945001 No alias Cell division control protein 48 homolog D... 0.02 Archaeplastida
GSVIVT01024407001 No alias 26S proteasome regulatory subunit 6A homolog OS=Solanum... 0.04 Archaeplastida
MA_24945g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g01020.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Pp3c16_10340V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c5_16820V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Archaeplastida
Smo168159 No alias 26S proteasome regulatory subunit 6B homolog... 0.03 Archaeplastida
Solyc02g062700.3.1 No alias Cell division control protein 48 homolog D... 0.03 Archaeplastida
Solyc03g097020.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e015525_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015589_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e023292_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e023330_P001 No alias no hits & (original description: none) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 399 525
IPR021911 DUF3523 61 329
No external refs found!