LOC_Os02g47140.1

Description : component RPL12 of LSU proteome component

Gene families : OG0002167 (Archaeplastida) Phylogenetic Tree(s): OG0002167_tree ,
OG_05_0002069 (LandPlants) Phylogenetic Tree(s): OG_05_0002069_tree ,
OG_06_0002451 (SeedPlants) Phylogenetic Tree(s): OG_06_0002451_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g47140.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	Archaeplastida
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
AT2G37190	No alias	Ribosomal protein L11 family protein	0.24	Archaeplastida
AT3G53430	No alias	Ribosomal protein L11 family protein	0.21	Archaeplastida
AT5G60670	No alias	Ribosomal protein L11 family protein	0.25	Archaeplastida
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	Archaeplastida
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
GSVIVT01025189001	No alias	No description available	0.2	Archaeplastida
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	Archaeplastida
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.19	Archaeplastida
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.29	Archaeplastida
Pp3c15_14410V3.1	No alias	Ribosomal protein L11 family protein	0.23	Archaeplastida
Pp3c16_2860V3.1	No alias	Ribosomal protein L11 family protein	0.22	Archaeplastida
Pp3c27_660V3.1	No alias	Ribosomal protein L11 family protein	0.27	Archaeplastida
Pp3c6_19290V3.1	No alias	Ribosomal protein L11 family protein	0.12	Archaeplastida
Pp3c9_15380V3.1	No alias	Ribosomal protein L11 family protein	0.21	Archaeplastida
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
Solyc06g075180.1.1	No alias	component RPL12 of LSU proteome component	0.15	Archaeplastida
Solyc11g065670.1.1	No alias	component RPL12 of LSU proteome component	0.23	Archaeplastida
Solyc11g069440.1.1	No alias	component RPL12 of LSU proteome component	0.27	Archaeplastida
Zm00001e007067_P001	No alias	component RPL12 of LSU proteome component	0.19	Archaeplastida
Zm00001e008316_P001	No alias	component RPL12 of LSU proteome component	0.19	Archaeplastida
Zm00001e023297_P001	No alias	component RPL12 of LSU proteome component	0.25	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR020784	Ribosomal_L11_N	13	70
IPR020783	Ribosomal_L11_C	75	144

External Links

No external refs found!

LOC_Os02g47140.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation