1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g47510.1

LOC_Os02g47510.1


Description : carotenoid cleavage dioxygenase (CCD4)


Gene families : OG0000267 (Archaeplastida) Phylogenetic Tree(s): OG0000267_tree ,
OG_05_0000908 (LandPlants) Phylogenetic Tree(s): OG_05_0000908_tree ,
OG_06_0003873 (SeedPlants) Phylogenetic Tree(s): OG_06_0003873_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47510.1
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00255760 evm_27.TU.AmTr_v1... Secondary metabolism.terpenoids.terpenoid... 0.03 Archaeplastida
AMTR_s00011p00256600 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00022p00253450 evm_27.TU.AmTr_v1... Secondary metabolism.terpenoids.terpenoid... 0.03 Archaeplastida
AMTR_s00039p00194530 evm_27.TU.AmTr_v1... Phytohormones.abscisic acid.synthesis.neoxanthin cleavage protein 0.02 Archaeplastida
AMTR_s00092p00172590 evm_27.TU.AmTr_v1... Phytohormones.abscisic acid.synthesis.neoxanthin cleavage protein 0.03 Archaeplastida
AT4G18350 NCED2, ATNCED2 nine-cis-epoxycarotenoid dioxygenase 2 0.03 Archaeplastida
Gb_04986 No alias carotenoid cleavage dioxygenase (CCD4) 0.06 Archaeplastida
Gb_14131 No alias carotenoid cleavage dioxygenase (CCD4). neoxanthin... 0.02 Archaeplastida
MA_10425950g0010 No alias carotenoid cleavage dioxygenase (CCD4) 0.03 Archaeplastida
MA_10428396g0010 No alias carotenoid cleavage dioxygenase (CCD4) 0.03 Archaeplastida
MA_90573g0010 No alias carotenoid cleavage dioxygenase (CCD4) 0.03 Archaeplastida
MA_906445g0010 No alias No annotation 0.02 Archaeplastida
Smo272067 No alias Secondary metabolism.terpenoids.terpenoid... 0.02 Archaeplastida
Smo80651 No alias Secondary metabolism.terpenoids.terpenoid... 0.03 Archaeplastida
Smo94524 No alias 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic... 0.04 Archaeplastida
Solyc05g053530.1.1 No alias neoxanthin cleavage protein 0.02 Archaeplastida
Solyc08g075480.4.1 No alias carotenoid cleavage dioxygenase (CCD4) 0.04 Archaeplastida
Solyc08g075490.4.1 No alias carotenoid cleavage dioxygenase (CCD4) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 158 628
No external refs found!