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  5. LOC_Os02g47770.1

LOC_Os02g47770.1


Description : transcription factor (zf-HD)


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47770.1
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AMTR_s00099p00145100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00119p00074870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.07 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.05 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.07 Archaeplastida
AT3G50890 ZHD7, HB28, AtHB28 homeobox protein 28 0.06 Archaeplastida
AT5G15210 ZHD8, ATHB30, ZFHD3, HB30 homeobox protein 30 0.04 Archaeplastida
GSVIVT01009128001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01011413001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01023137001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Gb_37393 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os03g50920.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_19630g0030 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_453742g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c21_11010V3.1 No alias homeobox protein 22 0.02 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.04 Archaeplastida
Solyc01g102980.3.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc02g067310.4.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc02g085160.1.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc03g116070.1.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc04g014260.2.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Solyc04g074990.3.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc04g080490.4.1 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Solyc05g007580.1.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.08 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e018364_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e022486_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 161 212
No external refs found!