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  5. LOC_Os02g48964.1

LOC_Os02g48964.1


Description : no hits & (original description: none)


Gene families : OG0001171 (Archaeplastida) Phylogenetic Tree(s): OG0001171_tree ,
OG_05_0001325 (LandPlants) Phylogenetic Tree(s): OG_05_0001325_tree ,
OG_06_0001016 (SeedPlants) Phylogenetic Tree(s): OG_06_0001016_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g48964.1
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00064900 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT1G36070 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
MA_34900g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c10_22840V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Pp3c3_27480V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Zm00001e004207_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 308 346
No external refs found!