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  5. LOC_Os02g49710.1

LOC_Os02g49710.1


Description : IDF1 iron uptake IRT1-ubiquitin ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001331 (LandPlants) Phylogenetic Tree(s): OG_05_0001331_tree ,
OG_06_0000478 (SeedPlants) Phylogenetic Tree(s): OG_06_0000478_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g49710.1
Cluster HCCA: Cluster_304

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G18773 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G20395 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G41440 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_35824 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g15020.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g58540.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os06g14640.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os12g40460.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_15246g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_181940g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_2159g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_85088g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_895676g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Pp3c18_5860V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Solyc02g062040.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc02g082420.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g033330.3.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc09g089890.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e025397_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e030102_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e032838_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038229_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 78 121
No external refs found!