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Description : RNA editing factor (ORRM)
Gene families : OG0012110 (Archaeplastida) Phylogenetic Tree(s): OG0012110_tree ,
OG_05_0012002 (LandPlants) Phylogenetic Tree(s): OG_05_0012002_tree ,
OG_06_0012056 (SeedPlants) Phylogenetic Tree(s): OG_06_0012056_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os02g49820.1 | |
| Cluster | HCCA: Cluster_298 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G20930 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Archaeplastida | |
| GSVIVT01011252001 | No alias | RNA processing.organelle machineries.RNA... | 0.08 | Archaeplastida | |
| Solyc11g007160.2.1 | No alias | RNA editing factor (ORRM) | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006066 | alcohol metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
| BP | GO:0016485 | protein processing | IEP | Neighborhood |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Neighborhood |
| BP | GO:0019751 | polyol metabolic process | IEP | Neighborhood |
| BP | GO:0043647 | inositol phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0044282 | small molecule catabolic process | IEP | Neighborhood |
| BP | GO:0046164 | alcohol catabolic process | IEP | Neighborhood |
| BP | GO:0046174 | polyol catabolic process | IEP | Neighborhood |
| BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Neighborhood |
| BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Neighborhood |
| BP | GO:0051604 | protein maturation | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0071545 | inositol phosphate catabolic process | IEP | Neighborhood |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Neighborhood |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Neighborhood |
| BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 297 | 363 |
| No external refs found! |