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  5. LOC_Os02g49830.1

LOC_Os02g49830.1


Description : Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana (sp|q9luj2|pp249_arath : 317.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0021539 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020853 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g49830.1
Cluster HCCA: Cluster_351

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00195950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22150,... 0.02 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G25360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 Archaeplastida
GSVIVT01021015001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
LOC_Os01g55960.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.05 Archaeplastida
LOC_Os01g68490.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
LOC_Os03g63510.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
LOC_Os04g09530.1 No alias RNA editing factor (BLX) 0.04 Archaeplastida
LOC_Os05g49740.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.04 Archaeplastida
LOC_Os07g47370.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.04 Archaeplastida
LOC_Os11g01836.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_81105g0010 No alias RNA editing factor (OTP82) 0.07 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
MA_94165g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
Smo126928 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
Smo334 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo33898 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.01 Archaeplastida
Smo61257 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.01 Archaeplastida
Smo77340 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo79648 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo82268 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 Archaeplastida
Smo86405 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
Smo88697 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 Archaeplastida
Smo90996 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.02 Archaeplastida
Smo92471 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo99993 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
Solyc02g068630.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc02g082160.2.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.02 Archaeplastida
Solyc04g051480.1.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.02 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.02 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.03 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc11g005970.1.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.02 Archaeplastida
Zm00001e007538_P001 No alias RNA editing factor (MEF21) 0.04 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.06 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e035817_P001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.05 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Neighborhood
BP GO:0006897 endocytosis IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0098657 import into cell IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 337 356
IPR002885 Pentatricopeptide_repeat 238 261
IPR002885 Pentatricopeptide_repeat 104 127
IPR002885 Pentatricopeptide_repeat 160 201
IPR002885 Pentatricopeptide_repeat 262 310
No external refs found!