LOC_Os02g49950.1

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000670 (LandPlants) Phylogenetic Tree(s): OG_05_0000670_tree ,
OG_06_0001036 (SeedPlants) Phylogenetic Tree(s): OG_06_0001036_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g49950.1
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	evm_27.TU.AmTr_v1...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.05	Archaeplastida
AT1G23030	No alias	ARM repeat superfamily protein	0.04	Archaeplastida
AT1G71020	No alias	ARM repeat superfamily protein	0.08	Archaeplastida
GSVIVT01016225001	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01021265001	No alias	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01023893001	No alias	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01030205001	No alias	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_10627	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	Archaeplastida
Gb_10871	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Gb_12875	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
Gb_29276	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os01g60860.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os05g39930.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os06g01304.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os08g37570.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os12g38210.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
MA_103976g0010	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.05	Archaeplastida
Pp3c17_580V3.1	No alias	plant U-box 13	0.03	Archaeplastida
Pp3c20_8020V3.1	No alias	plant U-box 13	0.03	Archaeplastida
Smo84320	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.03	Archaeplastida
Solyc04g007640.3.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Solyc05g008230.3.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Solyc06g076040.3.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
Solyc09g056450.4.1	No alias	U-box domain-containing protein 9 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e001226_P001	No alias	E3 ubiquitin ligase (PUB)	0.06	Archaeplastida
Zm00001e013323_P001	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e023475_P001	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	386	424
IPR000225	Armadillo	469	507
IPR003613	Ubox_domain	262	332

External Links

No external refs found!

LOC_Os02g49950.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation