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  5. LOC_Os02g52220.1

LOC_Os02g52220.1


Description : Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana (sp|q9fx35|pp117_arath : 579.0)


Gene families : OG0010085 (Archaeplastida) Phylogenetic Tree(s): OG0010085_tree ,
OG_05_0010116 (LandPlants) Phylogenetic Tree(s): OG_05_0010116_tree ,
OG_06_0008658 (SeedPlants) Phylogenetic Tree(s): OG_06_0008658_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g52220.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.03 Archaeplastida
AT1G73400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Solyc04g079150.1.1 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.03 Archaeplastida
Zm00001e015907_P001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 385 443
IPR002885 Pentatricopeptide_repeat 286 317
IPR002885 Pentatricopeptide_repeat 470 498
IPR002885 Pentatricopeptide_repeat 225 250
IPR002885 Pentatricopeptide_repeat 257 284
IPR002885 Pentatricopeptide_repeat 326 373
No external refs found!