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  5. LOC_Os02g52870.1

LOC_Os02g52870.1


Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 125.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0001181 (SeedPlants) Phylogenetic Tree(s): OG_06_0001181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g52870.1
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00043520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT2G40830 RHC1A RING-H2 finger C1A 0.01 Archaeplastida
AT3G13228 No alias RING/U-box superfamily protein 0.01 Archaeplastida
GSVIVT01020763001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01022973001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_28802 No alias E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis... 0.02 Archaeplastida
Mp7g04520.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo8109 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Solyc01g104260.3.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida
Zm00001e001202_P001 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e030803_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 198 240
No external refs found!