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  5. LOC_Os02g53050.1

LOC_Os02g53050.1


Description : RNA editing factor (CLB19)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0013988 (LandPlants) Phylogenetic Tree(s): OG_05_0013988_tree ,
OG_06_0013907 (SeedPlants) Phylogenetic Tree(s): OG_06_0013907_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g53050.1
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00250660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00067p00084250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27110... 0.02 Archaeplastida
AMTR_s00081p00019740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27110... 0.04 Archaeplastida
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
AMTR_s00173p00057570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.04 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01012206001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 Archaeplastida
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.03 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_08772 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_33411 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.03 Archaeplastida
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_175623g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
MA_20746g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_49629g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_835083g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_953793g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Smo109283 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Smo128850 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
Smo181046 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo79052 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
Solyc04g005770.3.1 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.04 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Solyc07g042760.1.1 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.05 Archaeplastida
Solyc08g078570.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc09g092150.1.1 No alias RNA editing factor (MEF21) 0.03 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Zm00001e016542_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e016923_P001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e023800_P003 No alias RNA editing factor (CLB19) 0.03 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
Zm00001e032485_P001 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.03 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.03 Archaeplastida
Zm00001e038850_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Zm00001e040418_P001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 196
IPR002885 Pentatricopeptide_repeat 199 247
IPR002885 Pentatricopeptide_repeat 301 348
IPR002885 Pentatricopeptide_repeat 275 300
IPR002885 Pentatricopeptide_repeat 375 399
No external refs found!