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  5. LOC_Os02g54360.1

LOC_Os02g54360.1


Description : TAC18 cofactor of plastid-encoded RNA polymerase


Gene families : OG0001063 (Archaeplastida) Phylogenetic Tree(s): OG0001063_tree ,
OG_05_0006615 (LandPlants) Phylogenetic Tree(s): OG_05_0006615_tree ,
OG_06_0007610 (SeedPlants) Phylogenetic Tree(s): OG_06_0007610_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g54360.1
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00142390 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT2G32180 PTAC18 plastid transcriptionally active 18 0.04 Archaeplastida
AT2G32650 No alias RmlC-like cupins superfamily protein 0.02 Archaeplastida
AT4G10300 No alias RmlC-like cupins superfamily protein 0.07 Archaeplastida
GSVIVT01037103001 No alias No description available 0.03 Archaeplastida
GSVIVT01037105001 No alias No description available 0.02 Archaeplastida
Gb_38487 No alias TAC18 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Pp3c20_2790V3.1 No alias plastid transcriptionally active 18 0.03 Archaeplastida
Smo143029 No alias No description available 0.03 Archaeplastida
Solyc07g049230.1.1 No alias TAC18 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
Zm00001e002513_P001 No alias TAC18 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR008579 DUF861_Cupin_3 76 145
No external refs found!