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  5. LOC_Os02g54830.1

LOC_Os02g54830.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001120 (LandPlants) Phylogenetic Tree(s): OG_05_0001120_tree ,
OG_06_0003795 (SeedPlants) Phylogenetic Tree(s): OG_06_0003795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g54830.1
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00198340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00056p00122930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00152p00054630 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G72200 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G72220 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.02 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G18773 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G60220 ATL4, TL4 TOXICOS EN LEVADURA 4 0.03 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G10160 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G17905 ATL4H RING/U-box superfamily protein 0.02 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT4G30400 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G41440 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.02 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01028306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_03946 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_32878 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_36232 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.04 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os04g49160.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os07g42610.1 No alias E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os08g34550.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os10g39770.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_1115518g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_111727g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_177169g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_222729g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_229590g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_2679g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_377006g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_391931g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_63503g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_816764g0010 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_9521306g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_96368g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Mp4g20140.1 No alias E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis... 0.02 Archaeplastida
Mp7g06030.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c20_12240V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c9_3390V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo412609 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo441685 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc02g087040.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc04g074790.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc04g074820.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc04g081890.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.02 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc07g006360.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e003126_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e007122_P001 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e014832_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023908_P006 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e030102_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e036691_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038107_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 122 165
No external refs found!