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  5. LOC_Os02g55310.1

LOC_Os02g55310.1


Description : Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana (sp|q3e911|pp400_arath : 402.0)


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0011531 (SeedPlants) Phylogenetic Tree(s): OG_06_0011531_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g55310.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.01 Archaeplastida
AMTR_s00045p00181820 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.04 Archaeplastida
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G15480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT2G20710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 Archaeplastida
GSVIVT01020534001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.01 Archaeplastida
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
Gb_20238 No alias RNA editing factor (POCO) 0.02 Archaeplastida
Gb_27873 No alias RNA editing factor (POCO) 0.01 Archaeplastida
LOC_Os01g17320.1 No alias RNA editing factor (POCO) 0.03 Archaeplastida
LOC_Os01g19490.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
LOC_Os04g25410.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
LOC_Os04g46010.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
LOC_Os07g40750.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
LOC_Os10g35730.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.11 Archaeplastida
LOC_Os10g35750.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.01 Archaeplastida
LOC_Os10g35760.2 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.02 Archaeplastida
LOC_Os12g34340.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_10342185g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_10431989g0010 No alias RNA editing factor (POCO) 0.02 Archaeplastida
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.04 Archaeplastida
MA_170161g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.02 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_87771g0010 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.04 Archaeplastida
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_9997953g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Smo406783 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
Smo412643 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.05 Archaeplastida
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.06 Archaeplastida
Smo421992 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 Archaeplastida
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.01 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.03 Archaeplastida
Solyc01g081320.4.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
Solyc01g089870.3.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.01 Archaeplastida
Solyc01g100580.3.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
Solyc02g078350.3.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.02 Archaeplastida
Solyc07g063220.4.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.01 Archaeplastida
Zm00001e007372_P001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.01 Archaeplastida
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.07 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Zm00001e039746_P002 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 Archaeplastida
Zm00001e040185_P001 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 174 230
IPR002885 Pentatricopeptide_repeat 365 391
No external refs found!