LOC_Os02g55630.1


Description : TAC17 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000971 (Archaeplastida) Phylogenetic Tree(s): OG0000971_tree ,
OG_05_0003359 (LandPlants) Phylogenetic Tree(s): OG_05_0003359_tree ,
OG_06_0003442 (SeedPlants) Phylogenetic Tree(s): OG_06_0003442_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g55630.1
Cluster HCCA: Cluster_324

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
AT1G15730 No alias Cobalamin biosynthesis CobW-like protein 0.02 Archaeplastida
AT1G80480 PTAC17 plastid transcriptionally active 17 0.04 Archaeplastida
Cpa|evm.model.tig00001110.7 No alias No description available 0.01 Archaeplastida
GSVIVT01017471001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.11 Archaeplastida
Gb_00365 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Gb_13256 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Pp3c11_23140V3.1 No alias plastid transcriptionally active 17 0.1 Archaeplastida
Smo405512 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
Solyc03g117430.3.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Zm00001e016143_P001 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 91 274
IPR011629 Cbl_biosynth_CobW-like_C 350 444
No external refs found!