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  5. AMTR_s00003p00175270

AMTR_s00003p00175270 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.150

Description : Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana


Gene families : OG0010523 (Archaeplastida) Phylogenetic Tree(s): OG0010523_tree ,
OG_05_0010518 (LandPlants) Phylogenetic Tree(s): OG_05_0010518_tree ,
OG_06_0010125 (SeedPlants) Phylogenetic Tree(s): OG_06_0010125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00175270
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
MA_935792g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Zm00001e033194_P001 No alias Pentatricopeptide repeat-containing protein At1g31790... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Neighborhood
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0034311 diol metabolic process IEP Neighborhood
BP GO:0034312 diol biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 281 311
IPR002885 Pentatricopeptide_repeat 78 104
IPR002885 Pentatricopeptide_repeat 254 279
IPR002885 Pentatricopeptide_repeat 177 223
No external refs found!