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  5. LOC_Os02g57460.1

LOC_Os02g57460.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0002509 (SeedPlants) Phylogenetic Tree(s): OG_06_0002509_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g57460.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00203540 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00040p00197990 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00152p00054630 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT1G53820 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G72220 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G28920 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G19140 DNF RING/U-box superfamily protein 0.07 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT4G17245 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G30370 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G30400 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.02 Archaeplastida
AT5G41440 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G66070 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00020876.18 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00020943.22 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Cre01.g009101 No alias No description available 0.03 Archaeplastida
GSVIVT01008754001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01020210001 No alias No description available 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01037142001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.02 Archaeplastida
Gb_36232 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.02 Archaeplastida
Gb_41385 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g46100.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os04g49160.1 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g06150.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.1 Archaeplastida
LOC_Os08g34550.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_15116g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_159453g0010 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
MA_17390g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_181940g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_229590g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_754688g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_7553g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_80729g0030 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_8556123g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g19680.1 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c14_14600V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c1_20780V3.1 No alias RING/U-box superfamily protein 0.06 Archaeplastida
Pp3c20_11600V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Solyc01g105620.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc03g114190.1.1 No alias RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc03g115465.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc04g074820.3.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Solyc04g081890.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.04 Archaeplastida
Solyc07g053420.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc11g005290.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g007530.2.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc12g087860.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e007157_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e008020_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009142_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015805_P001 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e016092_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e017959_P001 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e019884_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023260_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e023723_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e023908_P006 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e038229_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 141 184
No external refs found!