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  5. LOC_Os02g57620.1

LOC_Os02g57620.1


Description : putative silicon efflux transporter (LSI2)


Gene families : OG0001845 (Archaeplastida) Phylogenetic Tree(s): OG0001845_tree ,
OG_05_0001690 (LandPlants) Phylogenetic Tree(s): OG_05_0001690_tree ,
OG_06_0003853 (SeedPlants) Phylogenetic Tree(s): OG_06_0003853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g57620.1
Cluster HCCA: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01035710001 No alias Solute transport.carrier-mediated transport.IT... 0.04 Archaeplastida
LOC_Os03g01700.1 No alias putative silicon efflux transporter (LSI2) 0.04 Archaeplastida
Smo148775 No alias Solute transport.carrier-mediated transport.IT... 0.03 Archaeplastida
Smo97439 No alias Solute transport.carrier-mediated transport.IT... 0.02 Archaeplastida
Smo98013 No alias Solute transport.carrier-mediated transport.IT... 0.03 Archaeplastida
Zm00001e000055_P001 No alias putative silicon efflux transporter (LSI2) 0.03 Archaeplastida
Zm00001e002282_P001 No alias putative silicon efflux transporter (LSI2) 0.04 Archaeplastida
Zm00001e012743_P002 No alias putative silicon efflux transporter (LSI2) 0.03 Archaeplastida
Zm00001e023569_P001 No alias putative silicon efflux transporter (LSI2) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004680 Cit_transptr-like_dom 27 475
No external refs found!