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  5. LOC_Os02g58090.1

LOC_Os02g58090.1


Description : component SF3B2 of splicing factor 3B complex


Gene families : OG0003666 (Archaeplastida) Phylogenetic Tree(s): OG0003666_tree ,
OG_05_0003648 (LandPlants) Phylogenetic Tree(s): OG_05_0003648_tree ,
OG_06_0005895 (SeedPlants) Phylogenetic Tree(s): OG_06_0005895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g58090.1
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.24 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01002655001 No alias No description available 0.04 Archaeplastida
MA_258650g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.04 Archaeplastida
Pp3c17_13490V3.1 No alias proline-rich spliceosome-associated (PSP) family protein 0.03 Archaeplastida
Solyc02g078610.4.1 No alias component SF3B2 of splicing factor 3B complex 0.03 Archaeplastida
Zm00001e013359_P002 No alias component SF3B2 of splicing factor 3B complex 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007180 DUF382 171 296
IPR006568 PSP_pro-rich 305 350
No external refs found!