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  5. LOC_Os03g01610.1

LOC_Os03g01610.1


Description : Expansin-B1 OS=Oryza sativa subsp. japonica (sp|q40638|expb1_orysj : 476.0)


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0014137 (LandPlants) Phylogenetic Tree(s): OG_05_0014137_tree ,
OG_06_0014049 (SeedPlants) Phylogenetic Tree(s): OG_06_0014049_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g01610.1
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT2G20750 EXPB1, ATEXPB1,... expansin B1 0.04 Archaeplastida
AT4G28250 EXPB3, ATEXPB3,... expansin B3 0.03 Archaeplastida
GSVIVT01018168001 No alias Putative expansin-B2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_19114 No alias beta-like-class expansin 0.05 Archaeplastida
LOC_Os04g44780.1 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_10427897g0010 No alias beta-class expansin 0.03 Archaeplastida
MA_166764g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_78155g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_9323664g0010 No alias Expansin-B3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c17_12970V3.1 No alias expansin B3 0.01 Archaeplastida
Pp3c17_12980V3.1 No alias expansin B3 0.01 Archaeplastida
Pp3c1_37980V3.1 No alias expansin B3 0.05 Archaeplastida
Pp3c22_630V3.1 No alias expansin B3 0.03 Archaeplastida
Smo171427 No alias Expansin-B17 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc10g018500.1.1 No alias Putative expansin-B2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e000038_P001 No alias Expansin-B7 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e002338_P001 No alias Expansin-B2 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e005019_P001 No alias Expansin-B12 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e037879_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e037884_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e037914_P002 No alias Expansin-B9 OS=Zea mays (sp|q07154|expb9_maize : 487.0) 0.08 Archaeplastida
Zm00001e037919_P001 No alias Expansin-B1 OS=Zea mays (sp|p58738|expb1_maize : 482.0) 0.05 Archaeplastida
Zm00001e037922_P001 No alias Expansin-B1 OS=Zea mays (sp|p58738|expb1_maize : 484.0) 0.04 Archaeplastida
Zm00001e037923_P001 No alias Expansin-B1 OS=Zea mays (sp|p58738|expb1_maize : 485.0) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 170 251
IPR009009 RlpA-like_DPBB 79 154
No external refs found!